About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59442564_59468564_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59442564 - 59468564
Intron Length:
26001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TTTGTCTTATTT
Flanking Amino Acid:
IEWEQQNQGLVRSWMEKLKD
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.1
40.1
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
90
0.9
0.7
88.2
28.6
Minor 5ss
29.4
-2.4
3.3
30
43
Minor BPS
65.2
0.56
1.7
82.89
39.2

Associated Gene:

Gene:
ARMH4
Ensembl Gene ID:
ENSAPLG00000000800
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000829
59425632 - 59472599
46968