Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59472320_59472530_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

59472320 - 59472530

Intron Length:

211

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAGCAA

5'SS Class:

major

3'SS Sequence:

TTTCTTCCCCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

AGCTCTTTAATG

Flanking Amino Acid:

RNGSKRHKRKQREFNSMQDR

Intron Amino Acid Position:

684

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.1

59.1

41.5

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

80.3

0.68

0.7

74.1

31.1

Minor 5ss

-2.5

3.5

37.4

47.3

Minor BPS

66.5

0.38

1.3

62.05

40.5

Associated Gene:

Gene:

ARMH4

Ensembl Gene ID:

ENSAPLG00000000800

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000000829

59425632 - 59472599

46968