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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59590220_59597453_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59590220 - 59597453
Intron Length:
7234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TGAGCTTTAAAC
Flanking Amino Acid:
QEKQSPIKKIRECSRIFGED
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
85.1
0.79
0.7
84.2
23.8
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
59.9
0.29
1.5
65.24
40.1

Associated Gene:

Gene:
SLC35F4
Ensembl Gene ID:
ENSAPLG00000001042
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001033
59585133 - 59607472
22340