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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59603517_59604680_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59603517 - 59604680
Intron Length:
1164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTAAA
U12 Branch Point Sequence:
CTCTCCTTTACA
Flanking Amino Acid:
GSASTSALYKVLFKMFLGSA
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
72.3
39.5
Major BPS
55
0.12
1.2
57.8
37.4
Major PPT
85.1
0.79
0.7
79.2
26.4
Minor 5ss
33.1
-1.9
3.2
43.3
44.4
Minor BPS
69.8
0.62
1.7
75.21
42.3

Associated Gene:

Gene:
SLC35F4
Ensembl Gene ID:
ENSAPLG00000001042
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001033
59585133 - 59607472
22340