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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59606304_59607230_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59606304 - 59607230
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGTA
5'SS Class:
major
3'SS Sequence:
TTCTCCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTCTCCTTCACA
Flanking Amino Acid:
GTVLSVPGNAAVDLLKHKMI
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.7
36.4
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
84.3
0.77
0.7
79.4
26.1
Minor 5ss
32.3
-2
3.7
47
48.4
Minor BPS
74.9
0.78
1.7
83.03
38.2

Associated Gene:

Gene:
SLC35F4
Ensembl Gene ID:
ENSAPLG00000001042
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001033
59585133 - 59607472
22340