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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59645176_59647253_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59645176 - 59647253
Intron Length:
2078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ACTTATTGAAAT
Flanking Amino Acid:
VDSKYRRKGIGTNLVKKAIY
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
77.8
0.63
0.9
74.2
39.7
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
50.9
0.11
1.7
69.65
40.9

Associated Gene:

Gene:
NAA30
Ensembl Gene ID:
ENSAPLG00000001619
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019765
59637642 - 59655615
17974
ENSAPLT00000001716
59637642 - 59655615
17974
ENSAPLT00000039854
59637642 - 59655615
17974