Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59655255_59655525_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

59655255 - 59655525

Intron Length:

271

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGG|GCTGCTTCC

5'SS Class:

weak_major

3'SS Sequence:

CATCAGCCCCGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCTCAA

U12 Branch Point Sequence:

ACCAGCTCAACG

Flanking Amino Acid:

PFPGGGGGGGLRHLRASLKS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.7

0.02

1.4

52.1

43.5

Major BPS

61.8

0.29

1.1

63.4

35.6

Major PPT

-0.2

1.6

Minor 5ss

31.2

-2.1

3.9

37.1

40.4

Minor BPS

44.8

-0.5

46.48

46.1

Associated Gene:

Gene:

NAA30

Ensembl Gene ID:

ENSAPLG00000001619

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001716

59637642 - 59655615

17974