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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59689132_59689379_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59689132 - 59689379
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TGCATCTTACCA
Flanking Amino Acid:
ICTGNTAYVKMYFRIPDFTL
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
80.8
0.69
0.7
76.6
25.5
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
55.4
0.16
1.7
64.15
42.3

Associated Gene:

Gene:
AP5M1
Ensembl Gene ID:
ENSAPLG00000001799
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001955
59687739 - 59696725
8987
ENSAPLT00000024976
59687739 - 59696725
8987