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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59705450_59705833_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59705450 - 59705833
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACCT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGAAAC
U12 Branch Point Sequence:
ACGACGAGAATT
Flanking Amino Acid:
KVQELQKSNQVAFQHFQELD
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.4
38.4
Major BPS
46.9
-0.1
1.3
50.7
41.6
Major PPT
77.9
0.63
0.9
69.5
41.7
Minor 5ss
34
-1.8
3.3
49.1
46.6
Minor BPS
39.2
-0.7
2.2
52.78
42.3

Associated Gene:

Gene:
EXOC5
Ensembl Gene ID:
ENSAPLG00000002629
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002702
59696997 - 59721989
24993
ENSAPLT00000035650
59696997 - 59721989
24993
ENSAPLT00000031528
59696997 - 59722855
25859