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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59710990_59711151_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59710990 - 59711151
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CATTCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
RFSEVKSKIASKYHDLECQL
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.1
0.72
0.8
73.2
36.8
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
EXOC5
Ensembl Gene ID:
ENSAPLG00000002629
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035650
59696997 - 59721989
24993
ENSAPLT00000031528
59696997 - 59722855
25859
ENSAPLT00000002702
59696997 - 59721989
24993