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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59711786_59711886_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59711786 - 59711886
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCAT
5'SS Class:
major
3'SS Sequence:
TTTGAAACCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATATTATTAAAT
Flanking Amino Acid:
VDVYIKQCQEGAFLRNDVFE
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.5
39.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
62.6
0.28
1
53
41.4
Minor 5ss
32.5
-2
3.4
47.3
48.1
Minor BPS
61.3
0.43
1.7
77.89
37.5

Associated Gene:

Gene:
EXOC5
Ensembl Gene ID:
ENSAPLG00000002629
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035650
59696997 - 59721989
24993
ENSAPLT00000031528
59696997 - 59722855
25859
ENSAPLT00000002702
59696997 - 59721989
24993