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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59712028_59713124_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59712028 - 59713124
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCAA
5'SS Class:
major
3'SS Sequence:
CTAAATTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTACCTAAATT
Flanking Amino Acid:
IQNIFEVKLQIYVKDQLEEH
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
37.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.8
0.58
1
69.1
41.1
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
66
0.58
1.7
81.54
40.1

Associated Gene:

Gene:
EXOC5
Ensembl Gene ID:
ENSAPLG00000002629
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035650
59696997 - 59721989
24993
ENSAPLT00000031528
59696997 - 59722855
25859
ENSAPLT00000002702
59696997 - 59721989
24993