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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59713857_59715042_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59713857 - 59715042
Intron Length:
1186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ATCTAGTGAAAT
Flanking Amino Acid:
NHQKRSIGTGGIQDLKERIR
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
78.6
0.64
0.8
72.7
37.5
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
44.4
-0.3
2.3
65.75
44.2

Associated Gene:

Gene:
EXOC5
Ensembl Gene ID:
ENSAPLG00000002629
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002702
59696997 - 59721989
24993