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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59717367_59717977_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59717367 - 59717977
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATATCATTACAA
Flanking Amino Acid:
IDYALETGLAGIPSSDSKNA
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
79.4
0.73
1
80.1
32
Major PPT
81.9
0.72
0.8
81.2
30.9
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
49.8
-0
2
65.6
40

Associated Gene:

Gene:
EXOC5
Ensembl Gene ID:
ENSAPLG00000002629
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035650
59696997 - 59721989
24993
ENSAPLT00000031528
59696997 - 59722855
25859
ENSAPLT00000002702
59696997 - 59721989
24993