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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59718099_59718872_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59718099 - 59718872
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTTA
5'SS Class:
major
3'SS Sequence:
TATGCTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAACCTCACTT
Flanking Amino Acid:
QFNDHLMPLISSSPKLSECL
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
75.2
37.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.1
0.59
1
69.3
41.3
Minor 5ss
48.2
-0.2
2.8
67.3
43.8
Minor BPS
53.2
0.18
1.9
74.06
42.7

Associated Gene:

Gene:
EXOC5
Ensembl Gene ID:
ENSAPLG00000002629
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002702
59696997 - 59721989
24993
ENSAPLT00000035650
59696997 - 59721989
24993
ENSAPLT00000031528
59696997 - 59722855
25859