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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59720219_59721202_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59720219 - 59721202
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTTTTTAAAG
Flanking Amino Acid:
ENNVLIQYTNACVKVCSYVR
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81
0.7
1
82.5
32.7
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
68.2
0.43
1.4
70.46
36.6

Associated Gene:

Gene:
EXOC5
Ensembl Gene ID:
ENSAPLG00000002629
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031528
59696997 - 59722855
25859
ENSAPLT00000002702
59696997 - 59721989
24993
ENSAPLT00000035650
59696997 - 59721989
24993