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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59721959_59722848_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
59721959 - 59722848
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGCTCG
5'SS Class:
weak_major
3'SS Sequence:
TAAATAAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTGTATGTAAAT
Flanking Amino Acid:
HSFVQLRVDYRL*
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.3
55.9
43.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
61.8
0.27
1.1
57.2
46.3
Minor 5ss
45.7
-0.5
2.5
57.1
47.1
Minor BPS
48.7
-0
2.2
73.84
43

Associated Gene:

Gene:
EXOC5
Ensembl Gene ID:
ENSAPLG00000002629
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031528
59696997 - 59722855
25859