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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59765922_59768980_F

Intron Information:

Intron Rank:
137087
Intron Class:
major
Intron Phase:
Intron Coordinates:
59765922 - 59768980
Intron Length:
3059

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GATGTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.7
82.7
36.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.3
0.88
0.7
84.5
30
Minor 5ss
27.5
-2.6
3.9
40.4
45.7
Minor BPS
51.1
-0.1
1.6
53.89
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023837
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029451
59765799 - 59775362
9564