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Intron Name: Anas_platyrhynchos_platyrhynchos_5_59917648_59918077_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

59917648 - 59918077

Intron Length:

430

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTTTCTTGA

5'SS Class:

weak_major

3'SS Sequence:

CTCCCCTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

GCTCCCTGACCC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.5

0.27

1.3

59.7

41.7

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

74.2

0.55

0.7

68.5

25.1

Minor 5ss

47.6

-0.2

2.2

59.8

44.6

Minor BPS

50.6

-0

1.8

61.68

43.2

Associated Gene:

Gene:

OTX2

Ensembl Gene ID:

ENSAPLG00000030438

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035611

59917348 - 59921642

4295