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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59918296_59918674_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59918296 - 59918674
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCCAC
5'SS Class:
major
3'SS Sequence:
GCTCCTTTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
CACTGAGTGACA
Flanking Amino Acid:
DLLHPSVGYPATPRKQRRER
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
63.6
42.9
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
77.5
0.62
0.8
72
32.5
Minor 5ss
38.6
-1.3
3.1
51.7
45
Minor BPS
38.7
-0.9
2.4
47.74
42.7

Associated Gene:

Gene:
OTX2
Ensembl Gene ID:
ENSAPLG00000030438
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035611
59917348 - 59921642
4295