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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59957974_59958821_R

Intron Information:

Intron Rank:
148738
Intron Class:
major
Intron Phase:
Intron Coordinates:
59957974 - 59958821
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GATTTTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
71.7
0.49
1
72.5
37.7
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
58.3
0.34
1.6
74.09
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027493
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021525
59957224 - 59960193
2970