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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59958949_59959106_R

Intron Information:

Intron Rank:
148739
Intron Class:
major
Intron Phase:
Intron Coordinates:
59958949 - 59959106
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCCCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTACAC
U12 Branch Point Sequence:
TGCTACTACACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
51.5
0.04
1
60.7
35.1
Major PPT
69.9
0.45
1
67.9
38.9
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
46
-0.3
2.2
59.69
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027493
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021525
59957224 - 59960193
2970