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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59960564_59961592_R

Intron Information:

Intron Rank:
135503
Intron Class:
major
Intron Phase:
Intron Coordinates:
59960564 - 59961592
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAGCA
5'SS Class:
major
3'SS Sequence:
ACCTTTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TCCCCTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
62.1
36.8
Major BPS
70
0.5
1
67
39.8
Major PPT
74.8
0.56
0.8
68.7
31.2
Minor 5ss
28.7
-2.4
3.6
39
46.3
Minor BPS
59.2
0.37
1.7
72.56
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044575
59960214 - 59970906
10693