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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59961666_59962435_R

Intron Information:

Intron Rank:
135504
Intron Class:
major
Intron Phase:
Intron Coordinates:
59961666 - 59962435
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTCAC
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTATCTAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
66.7
38.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
40.7
-1
2.8
49.5
41.3
Minor BPS
54.8
0.01
1.7
61.8
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044575
59960214 - 59970906
10693