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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59962121_59962435_R

Intron Information:

Intron Rank:
135494
Intron Class:
major
Intron Phase:
Intron Coordinates:
59962121 - 59962435
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTCAC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCTAAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
66.7
38.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
92.3
0.95
0.6
92.1
18.5
Minor 5ss
40.7
-1
2.8
49.5
41.3
Minor BPS
62
0.37
1.9
80.03
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020611
59962073 - 59970906
8834