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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59962627_59968002_R

Intron Information:

Intron Rank:
135495
Intron Class:
major
Intron Phase:
Intron Coordinates:
59962627 - 59968002
Intron Length:
5376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACCAGG
5'SS Class:
major
3'SS Sequence:
TCTTGCCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTGTTTTTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.2
59.7
46.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
71
0.47
0.8
62.6
34.6
Minor 5ss
38.9
-1.3
2.8
48.8
47
Minor BPS
53.2
0.08
1.6
60.45
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029786
59960214 - 59970906
10693
ENSAPLT00000020611
59962073 - 59970906
8834
ENSAPLT00000044575
59960214 - 59970906
10693