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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59968058_59970748_R

Intron Information:

Intron Rank:
135496
Intron Class:
major
Intron Phase:
Intron Coordinates:
59968058 - 59970748
Intron Length:
2691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TATACGGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
AAATATGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
67.7
0.4
1
62.5
43.8
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
47.3
-0.1
2.1
65.28
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044575
59960214 - 59970906
10693
ENSAPLT00000029786
59960214 - 59970906
10693
ENSAPLT00000020611
59962073 - 59970906
8834