About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_59970907_59999692_R

Intron Information:

Intron Rank:
135497
Intron Class:
major
Intron Phase:
Intron Coordinates:
59970907 - 59999692
Intron Length:
28786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCAG
5'SS Class:
major
3'SS Sequence:
TTCATTATTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TAATCTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
54
44.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.8
0.63
0.9
70.4
39.9
Minor 5ss
28.4
-2.5
3.5
37.7
47.1
Minor BPS
83.8
1.14
1
90.27
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025288
59969617 - 59999930
30314