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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5999779_6000892_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5999779 - 6000892
Intron Length:
1114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTGGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTACGTTTATTT
Flanking Amino Acid:
SSPSPCKRSNSMSDDEQESG
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78.7
0.65
0.9
77.5
36.5
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
48.8
-0
2
69.81
41.7

Associated Gene:

Gene:
HIPK3
Ensembl Gene ID:
ENSAPLG00000007742
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008071
5997028 - 6047079
50052