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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60016671_60026804_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60016671 - 60026804
Intron Length:
10134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTCC
5'SS Class:
major
3'SS Sequence:
TCTGTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATGTTATCT
Flanking Amino Acid:
AASLLFYTALRLSGSYAGGI
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.7
38.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.3
0.73
0.9
76.3
37.7
Minor 5ss
36.9
-1.5
3.4
51
45.8
Minor BPS
47.9
-0
2.3
71.71
45.4

Associated Gene:

Gene:
TMEM260
Ensembl Gene ID:
ENSAPLG00000008287
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008617
60004170 - 60035951
31782
ENSAPLT00000008614
60004170 - 60027742
23573