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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6002278_6003265_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6002278 - 6003265
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTCGA
5'SS Class:
major
3'SS Sequence:
GTTTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
GTTTTCTTCACA
Flanking Amino Acid:
ATKRNKLCQNRSNALQNTNI
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.2
61
45.3
Major BPS
66.7
0.41
1
57.8
39
Major PPT
85.1
0.79
0.8
80
32.1
Minor 5ss
28.5
-2.5
2.8
33.3
41.6
Minor BPS
69.5
0.61
1.7
79.59
36.6

Associated Gene:

Gene:
HIPK3
Ensembl Gene ID:
ENSAPLG00000007742
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008071
5997028 - 6047079
50052