About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60027743_60035516_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60027743 - 60035516
Intron Length:
7774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAACGTAC
5'SS Class:
major
3'SS Sequence:
TATTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTATTT
Flanking Amino Acid:
LPAGLPGGDAGELITAAYEL
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.2
60.9
40.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
88
0.86
0.7
83.8
30.9
Minor 5ss
42.1
-0.9
3.2
49.9
46.8
Minor BPS
59.5
0.38
1.9
82.12
39.2

Associated Gene:

Gene:
TMEM260
Ensembl Gene ID:
ENSAPLG00000008287
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008617
60004170 - 60035951
31782