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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6003428_6003527_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6003428 - 6003527
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTCCTTTATT
Flanking Amino Acid:
VAGPQRLGDWGKMITQGTHY
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
71.6
40.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
86.1
0.81
0.7
85.2
29.2
Minor 5ss
34.1
-1.8
2.8
34.5
41
Minor BPS
81.6
1.08
1.4
96.2
29.4

Associated Gene:

Gene:
HIPK3
Ensembl Gene ID:
ENSAPLG00000007742
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008071
5997028 - 6047079
50052