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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60087663_60090687_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60087663 - 60090687
Intron Length:
3025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GTCCCACCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
TGACCATCATCT
Flanking Amino Acid:
TRSAQQRGKLVENETNVLQD
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
65.5
0.35
0.9
55.5
35.4
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
45.7
-0.2
2
65.47
43.9

Associated Gene:

Gene:
PELI2
Ensembl Gene ID:
ENSAPLG00000008440
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018824
60087096 - 60135840
48745
ENSAPLT00000008759
60087096 - 60238648
151553
ENSAPLT00000028545
60087096 - 60158574
71479