About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60097922_60131152_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60097922 - 60131152
Intron Length:
33231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTGTTCAACA
Flanking Amino Acid:
HVISTPQASKAISCKGQHSI
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
42.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.4
0.71
0.9
77.7
35.5
Minor 5ss
45.8
-0.4
2.6
60.7
44
Minor BPS
62.8
0.4
2
79.34
37.2

Associated Gene:

Gene:
PELI2
Ensembl Gene ID:
ENSAPLG00000008440
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018824
60087096 - 60135840
48745
ENSAPLT00000008759
60087096 - 60238648
151553
ENSAPLT00000028545
60087096 - 60158574
71479