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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6010169_6011010_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6010169 - 6011010
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCAATGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TTCTATCTGACT
Flanking Amino Acid:
IFNSLDDIVHVNMVMDLEGS
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
64
0.31
1
60
40.6
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
53.2
0.18
1.9
76.77
39.9

Associated Gene:

Gene:
HIPK3
Ensembl Gene ID:
ENSAPLG00000007742
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008071
5997028 - 6047079
50052