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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6011098_6012982_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6011098 - 6012982
Intron Length:
1885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AGCTTCTAAACT
Flanking Amino Acid:
DAPYSSWRLKTLEEHEAETG
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.6
41.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74
0.54
1.7
87.9
29.4
Minor 5ss
41.2
-1
2.9
58.4
45.7
Minor BPS
61.7
0.44
1.7
74.4
42.5

Associated Gene:

Gene:
HIPK3
Ensembl Gene ID:
ENSAPLG00000007742
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008071
5997028 - 6047079
50052