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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60131283_60238586_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60131283 - 60238586
Intron Length:
107304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGCTGG
5'SS Class:
major
3'SS Sequence:
TGTTTCATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTTATTTAAAT
Flanking Amino Acid:
CRAGGGELLLGYNGSLPNGD
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
51.5
47.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79
0.65
0.8
71.1
39.6
Minor 5ss
41.4
-1
3.2
46.4
49
Minor BPS
67.5
0.63
1.6
83.3
37.1

Associated Gene:

Gene:
PELI2
Ensembl Gene ID:
ENSAPLG00000008440
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008759
60087096 - 60238648
151553