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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60239796_60242190_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60239796 - 60242190
Intron Length:
2395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TACTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTTTTGTTACTA
Flanking Amino Acid:
AVRQNEELNLLKTQLNETLS
Intron Amino Acid Position:
1270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
82.4
0.73
0.9
76.7
36.7
Minor 5ss
34
-1.8
2.9
40.9
39.4
Minor BPS
53.6
0.11
2.3
74.1
38.6

Associated Gene:

Gene:
KTN1
Ensembl Gene ID:
ENSAPLG00000012978
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037403
60232245 - 60284616
52372
ENSAPLT00000032188
60232245 - 60284616
52372
ENSAPLT00000013663
60232245 - 60284616
52372