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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60239796_60242472_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60239796 - 60242472
Intron Length:
2677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACATG
5'SS Class:
strong_major
3'SS Sequence:
TACTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTTTTGTTACTA
Flanking Amino Acid:
RSTYVSEVRELKTQLNETLS
Intron Amino Acid Position:
1242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
75.1
41.1
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
82.4
0.73
0.9
76.7
36.7
Minor 5ss
42.3
-0.8
3
56.9
47.4
Minor BPS
53.6
0.11
2.3
74.1
38.6

Associated Gene:

Gene:
KTN1
Ensembl Gene ID:
ENSAPLG00000012978
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044875
60232245 - 60284616
52372