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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60242557_60243041_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60242557 - 60243041
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTACGTGCA
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTGTTTTAACT
Flanking Amino Acid:
LREEIKEVETLKKEREHLES
Intron Amino Acid Position:
1214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.35
1.2
59.5
39.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.1
0.77
0.8
77.1
37.1
Minor 5ss
34.8
-1.7
3.4
50.7
45.7
Minor BPS
72.1
0.77
1.3
82.56
39.6

Associated Gene:

Gene:
KTN1
Ensembl Gene ID:
ENSAPLG00000012978
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037403
60232245 - 60284616
52372
ENSAPLT00000032188
60232245 - 60284616
52372
ENSAPLT00000013663
60232245 - 60284616
52372
ENSAPLT00000044875
60232245 - 60284616
52372