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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60243114_60244200_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60243114 - 60244200
Intron Length:
1087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
TTGAAAACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTTCTTGAAAA
Flanking Amino Acid:
VEESQKELKQMRSSVLSLEH
Intron Amino Acid Position:
1190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
65.1
0.34
1
56.6
43.1
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
63.9
0.43
1.6
73.41
38.3

Associated Gene:

Gene:
KTN1
Ensembl Gene ID:
ENSAPLG00000012978
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037403
60232245 - 60284616
52372
ENSAPLT00000032188
60232245 - 60284616
52372
ENSAPLT00000013663
60232245 - 60284616
52372
ENSAPLT00000044875
60232245 - 60284616
52372