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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60244471_60244900_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60244471 - 60244900
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAA
U12 Branch Point Sequence:
TGAGATTGAACT
Flanking Amino Acid:
RGASGSEDVKAMEQKLKEAE
Intron Amino Acid Position:
1129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
61.6
0.29
1.2
55.4
42
Major PPT
85.4
0.8
0.8
80.1
31.8
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
49.4
0.04
1.7
67.66
42.6

Associated Gene:

Gene:
KTN1
Ensembl Gene ID:
ENSAPLG00000012978
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032188
60232245 - 60284616
52372
ENSAPLT00000022970
60232245 - 60284616
52372
ENSAPLT00000013663
60232245 - 60284616
52372
ENSAPLT00000044875
60232245 - 60284616
52372
ENSAPLT00000037403
60232245 - 60284616
52372