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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60244982_60246069_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60244982 - 60246069
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCCGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
GTAGCTCTAACT
Flanking Amino Acid:
FPNVSLPTNVSHSEWICGFE
Intron Amino Acid Position:
1102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
74
0.54
1
69.7
36.8
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
56.8
0.29
1.8
74.33
42.2

Associated Gene:

Gene:
KTN1
Ensembl Gene ID:
ENSAPLG00000012978
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022970
60232245 - 60284616
52372
ENSAPLT00000013663
60232245 - 60284616
52372
ENSAPLT00000044875
60232245 - 60284616
52372
ENSAPLT00000037403
60232245 - 60284616
52372
ENSAPLT00000032188
60232245 - 60284616
52372