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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60254742_60256595_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60254742 - 60256595
Intron Length:
1854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGTC
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTATATTGAACT
Flanking Amino Acid:
KVASKEKTVQVSITSQVKEL
Intron Amino Acid Position:
842

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
72.3
37.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.8
0.81
0.7
85.6
29.2
Minor 5ss
48.9
-0.1
2.9
69.7
41.2
Minor BPS
59.3
0.37
1.6
75.99
39.9

Associated Gene:

Gene:
KTN1
Ensembl Gene ID:
ENSAPLG00000012978
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032188
60232245 - 60284616
52372