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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60257402_60258275_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60257402 - 60258275
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
TTTTTCTAAGTT
Flanking Amino Acid:
QSLQIQLSEQVSFQSLVEEL
Intron Amino Acid Position:
799

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
37.4
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
70.2
0.45
1
66.5
38.7
Minor 5ss
38
-1.4
3.3
57.1
47
Minor BPS
60.9
0.42
1.9
83.07
38.8

Associated Gene:

Gene:
KTN1
Ensembl Gene ID:
ENSAPLG00000012978
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022970
60232245 - 60284616
52372
ENSAPLT00000013663
60232245 - 60284616
52372
ENSAPLT00000044875
60232245 - 60284616
52372
ENSAPLT00000037403
60232245 - 60284616
52372
ENSAPLT00000032188
60232245 - 60284616
52372