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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60259327_60259464_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60259327 - 60259464
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTTCCTAATA
Flanking Amino Acid:
NKDLIEQMERSMREKDDKIK
Intron Amino Acid Position:
745

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.8
0.74
0.8
80.8
36.5
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
67.4
0.54
1.6
78.12
32

Associated Gene:

Gene:
KTN1
Ensembl Gene ID:
ENSAPLG00000012978
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013663
60232245 - 60284616
52372
ENSAPLT00000044875
60232245 - 60284616
52372
ENSAPLT00000037403
60232245 - 60284616
52372
ENSAPLT00000032188
60232245 - 60284616
52372
ENSAPLT00000022970
60232245 - 60284616
52372