About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60260680_60263096_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60260680 - 60263096
Intron Length:
2417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTAAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATATGTTTAAAT
Flanking Amino Acid:
QTANTKEEFKVLKDQNQTLQ
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.1
0.59
1
71.5
42.8
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
59.2
0.37
1.8
76.48
39.9

Associated Gene:

Gene:
KTN1
Ensembl Gene ID:
ENSAPLG00000012978
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022970
60232245 - 60284616
52372
ENSAPLT00000013663
60232245 - 60284616
52372
ENSAPLT00000044875
60232245 - 60284616
52372
ENSAPLT00000037403
60232245 - 60284616
52372
ENSAPLT00000032188
60232245 - 60284616
52372