About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60263188_60263295_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60263188 - 60263295
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTGTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
ATGTATTTAACT
Flanking Amino Acid:
AAHELERMQKSIHIKDDKIR
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
71.6
0.49
1
68.4
42.1
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
71.5
0.75
1.4
83.28
37.7

Associated Gene:

Gene:
KTN1
Ensembl Gene ID:
ENSAPLG00000012978
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032188
60232245 - 60284616
52372
ENSAPLT00000022970
60232245 - 60284616
52372
ENSAPLT00000013663
60232245 - 60284616
52372
ENSAPLT00000044875
60232245 - 60284616
52372
ENSAPLT00000037403
60232245 - 60284616
52372