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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_60265209_60267044_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60265209 - 60267044
Intron Length:
1836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCTT
5'SS Class:
major
3'SS Sequence:
TTTCCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAG
U12 Branch Point Sequence:
CTTTACTCAGTT
Flanking Amino Acid:
QKLHSQMAAQTSASVLAEEL
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
66.9
44.1
Major BPS
63.2
0.33
1.5
71.6
36.4
Major PPT
89.3
0.88
0.6
84.8
22.8
Minor 5ss
35
-1.7
3.8
55.9
48.3
Minor BPS
49.8
0.07
2
73.26
43.8

Associated Gene:

Gene:
KTN1
Ensembl Gene ID:
ENSAPLG00000012978
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022970
60232245 - 60284616
52372
ENSAPLT00000013663
60232245 - 60284616
52372
ENSAPLT00000044875
60232245 - 60284616
52372
ENSAPLT00000037403
60232245 - 60284616
52372
ENSAPLT00000032188
60232245 - 60284616
52372